System Engineer II, Scientific Systems at Allen Institute in Seattle
- Company: Allen Institute
- Location: Seattle
- Posted: Sep 18, 2026
- Type: Full-time
- Salary: $112,950- $139,750*
- Experience: 4+ years
- Visa sponsorship available
Overview
As a key member of the IT Infrastructure Team, you are an experienced Linux System Engineer who enjoys solving problems and building systems using a combination of creativity and technical rigor. This role will be involved with cloud-based integrations, server patching, cybersecurity management and …
Job description
- As a key member of the IT Infrastructure Team, you are an experienced Linux System Engineer who enjoys solving problems and building systems using a combination of creativity and technical rigor. This role will be involved with cloud-based integrations, server patching, cybersecurity management and designing and deploying IT infrastructure. You don't have to know everything (that's why you're on a team), but we do expect good judgement and a desire to learn.
Responsibilities
- Manage a Linux-based research environment with over 350 servers and workstations and 20 PB of storage
- Help design, deploy, and upgrade IT infrastructure products and services supporting scientific computing
- Engage in hardware and software lifecycle management
- Manage patch deployment and troubleshooting on workstations and servers
- Participate in the development of system standards, policies, and procedures
- Manage scientific systems cybersecurity software agents and monitoring systems
- Monitor system performance and plan for future scaling
- Manage infrastructure resources in public cloud
Requirements
- Bachelor’s degree or equivalent combination of degree and experience required
- At least one year of professional UNIX/Linux system administration experience
- History of supporting highly available IT services in a 100+ server environment
- Operational automation skills using shell or Python
- Associate-level AWS certification (CloudOps Engineer or Solutions Architect)
- Four or more years of professional system administration experience preferred
- Experience managing centralized storage systems such as Isilon, VAST Data, or NetApp
- Familiarity with virtualization frameworks such as OpenStack and VMware
- Experience using and managing Docker containers in a Kubernetes environment
- Understanding of TCP/IP networking fundamentals
- Familiarity with configuration management systems such as Salt and Ansible
- Knowledge of high-performance computing (HPC) schedulers such as Slurm
- Customer-focused mindset
- Excellent communication and collaboration skills
- Ability to balance competing priorities
Skills
Required
- UNIX/Linux system administration
Preferred
- Docker containers in Kubernetes
- TCP/IP networking fundamentals
- Configuration management (Salt, Ansible)
- HPC schedulers (Slurm)
Benefits
- Employees (and their families) are eligible to enroll in benefits per eligibility rules outline in the Allen Institute’s Benefits Guide. These benefits include medical, dental, vision, and basic life insurance. Employees are also eligible to enroll in the Allen Institute’s 401k plan. Paid time off is also available as outlined in the Allen Institutes Benefits Guide. Details on the Allen Institute’s benefits offering are located at the following link to the Benefits Guide: https://alleninstitute.org/careers/benefits.
- $112,950- $139,750*
- Final salary depends on the required education for the role, experience, level of skills relevant to the role, and work location, where applicable.
About Allen Institute
The Allen Institute accelerates science for a healthier world through large-scale research designed to answer some of the most complex questions in biology. Our multi-disciplinary teams generate foundational knowledge, tools, and data to understand how our brain, cells, and immune system work. We share our work openly so others can build on it, move faster, and ask bigger questions. We drive discovery forward and create new possibilities for improving human health. The mission of the Administration team is to enable the people and science of the Allen Institute. We connect teams, steward resources, and build strong systems that give our accelerators the stability and flexibility to pursue ambitious questions, collaborate across disciplines, and share their work openly.